OrthoSeq


Your email address (report results will be sent to this address):

Enter sequence information below (note: OrthoSeq will perform repeat masking of sequences)

Please enter sequence 1 information and click the radio button to the left of the chosen method of sequence entry.

Species:
Fasta file 1:
or specify a sequence from ensembl:
Chromosome name:
Start coordinate:
End coordinate:

or Paste fasta formatted sequence here:




Upload Features for Analysis (optional)

GFF File 1 (corresponding to sequence 1):
or Paste GFF contents here:


Please enter sequence 2 information and click the radio button to the left of the chosen method of sequence entry.

Species:
Fasta file 2:
or specify a sequence from ensembl:
Chromosome name:
Start Coordinate:
End coordinate:

or Paste fasta formatted sequence here:




Upload features for analysis (optional)

GFF File 2 (corresponding to sequence 2):
or Paste GFF contents here:


Conservation Region and Co-occurrence Analysis Parameters (default is complete agreement):

Select desired filters to apply to sequence features (requires GFF files to be submitted above)
Find all co-occurring features
Find all co-occurring features within conserved regions
allow partial overlaps (default is 1bp for base pair overlap, or 10% for percentage overlap)

Units of Overlap:
(optional) minimum overlap:


Select analyses to perform:

Genescan