About MSCAN

Help

Module detectors

Software

FAQ

INPUT

New analysis

About MSCAN

Help

Software

Module detectors

FAQ

Your matrices
Enter one or more matrices in fasta format
>mef2 10 0 0 0 22 0 6 2 3 4 22 10 0 2 12 0 0 0 0 0 0 0 0 0 9 20 2 0 0 0 0 0 0 0 0 10 3 0 8 22 0 22 16 20 19 18 0 2 >myf 7 9 4 0 16 7 0 6 0 0 6 0 8 0 2 15 0 0 15 0 0 10 0 0 1 7 10 1 0 9 1 0 16 6 0 16 0 0 0 0 0 0 0 10 0 0 10 0 >Sp1 0.0 3.0 2.0 1.0 0.0 0.0 4.0 0.0 0.0 0.0 0.0 6.0 4.0 8.0 10.0 12.0 12.0 0.0 12.0 12.0 12.0 11.0 5.0 2.0 2.0 1.0 0.0 0.0 6.0 0.0 0.0 0.0 1.0 1.0 3.0 0.0 0.0 0.0 0.0 2.0 0.0 0.0 0.0 0.0 >srf 7.0 9.0 0.0 0.0 18.0 9.0 15.0 8.0 21.0 14.0 0.0 0.0 7.0 5.0 2.0 21.0 17.0 0.0 0.0 1.0 0.0 0.0 2.0 0.0 0.0 8.0 7.0 4.0 0.0 0.0 0.0 0.0 4.0 2.0 0.0 0.0 21.0 21.0 6.0 2.0 6.0 0.0 4.0 3.0 12.0 1.0 11.0 0.0 5.0 0.0 0.0 0.0 >tef 1.0 9.0 0.0 12.0 0.0 0.0 0.0 0.0 5.0 1.0 2.0 0.0 6.0 0.0 12.0 0.0 0.0 0.0 12.0 11.0 0.0 7.0 4.0 2.0 1.0 3.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 4.0 3.0 8.0 4.0 0.0 0.0 0.0 12.0 12.0 0.0 1.0 7.0 0.0 3.0 2.0
Or upload a matrix file

Or select a matrix from the JASPAR database (Hold Crtl-key to select multiple factors)

Or upload a list with matrix identifiers

Your sequences

Enter one or more sequences in fasta format

Or upload a sequence file

Or enter a Genbank accession number

Your Parameters
Window size		Window step		Sort by
Minimum number of hits		Maximum number of hits		Replace lowercase with 'N'
Treshold

Please send and questions, comments or bugs to mscan@cmmt.ubc.ca